PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0108s00120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 203aa    MW: 21977.5 Da    PI: 6.5146
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0108s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1672.3e-5226123294
              NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse.....asdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                        reqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tse     asdkcqrekrktingddllwa+atlGfe+yv+plk+yl+
  Vradi0108s00120.1  26 REQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEyaaspASDKCQREKRKTINGDDLLWAMATLGFEEYVDPLKIYLA 117
                        89********************************************998877789************************************* PP

              NF-YB  89 kyrele 94 
                         yre +
  Vradi0108s00120.1 118 SYREGD 123
                        ***965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.5E-5022134IPR009072Histone-fold
SuperFamilySSF471133.46E-3528133IPR009072Histone-fold
PfamPF008082.0E-2431100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.3E-175977No hitNo description
PRINTSPR006155.3E-1783101No hitNo description
PRINTSPR006155.3E-17102120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MADAPASPGG GGSHESGEHS PRSNFREQDR FLPIANISRI MKKALPANGK IAKDAKETVQ  60
ECVSEFISFI TSEYAASPAS DKCQREKRKT INGDDLLWAM ATLGFEEYVD PLKIYLASYR  120
EGDSKGSAKG GESSSKRDVY PNPNVQLAHQ GSFSQGLLGS CIGDRVVAFF SDFRPQAPGS  180
TTYDCSHARP RVDIDLPETR VI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_A6e-4524121294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4awl_B6e-4524121294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
1n1j_A6e-4524121193NF-YB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-120AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554361.11e-93PREDICTED: nuclear transcription factor Y subunit B-10-like
SwissprotQ8VYK43e-72NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0R0EXD23e-95A0A0R0EXD2_SOYBN; Uncharacterized protein
TrEMBLK7MYY67e-95K7MYY6_SOYBN; Uncharacterized protein
STRINGGLYMA19G36220.22e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.19e-63nuclear factor Y, subunit B10